Hi @heathcliff,
1. Yes, the precheck should pass. The Pad layer (pad opening) is checked against a golden reference (first AND and then XOR) to ensure that the bonding machine has something to bond to. Which circuit is connected to the bond pad is entirely up to you.
2. We didn't plan on any functional changes to the CoB, but Andrew can confirm that for sure. As Mike mentioned, only the grounds are shorted together.
3. Yes, the reason is as Egor mentioned: 3.3V is not enough to blow the fuses, so I dropped the eFuses for this FPGA version, as I wanted to target 3.3V-only. In a future version, I would also like to have multiple power domains in the core and add the eFuses back.
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